Resources & Tools for published studies

Online Tools & Software

Online query tools and bioinformatics-related softwares can be accessed here.

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    Xtail

    An R package for genome-wide assessment of differential translations with ribosome profiling data .
    You can install it from Bioconductor.

    Or download from Github (link).

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    MeTRN online search tool

    A simple online search tool for quick query of MeTRN result set.

    Click here to access.

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    RiboCode

    RiboCode is a very simple but high-quality computational algorithm to identify genome-wide translated ORFs using ribosome-profiling data.

    Available as python package, can be installed via pypi "pip install ribocode"

    Or download from github (link).

Resources

Data files of published studies

MeTRN network

A tab-separated file containg the interactions between transcription factors, DNA methylations and target genes.

download link (zip)
download link (7zip, smaller)

Scripts for MeTRN project

A compressed file containing related scripts for MeTRN projects.

download link (rar)